PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA168G00019
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 305aa    MW: 34972.8 Da    PI: 8.4421
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA168G00019genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.6e-10178260377
                  EE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
           B3   3 kvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                  k+lt+sd +   +rl+l kk +++         +++  e+++++++ ++g+  e+k+++++k+ + vl++GW++Fvka gL+  
  AA168G00019 178 KQLTKSDINGGqSRLMLGKKEVKDKflcllkesEIPGVEGIDVSVYGPDGKPHEMKFKMWNKD-TPVLANGWSKFVKAYGLERY 260
                  77777875544499********9999*99988855555899*********9888888889997.679**************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-12168273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-13174279No hitNo description
SuperFamilySSF1019365.49E-13175281IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKTLFSLITD NINGEPQNFI ADVIKKLEAV INEGVIKKAC KKRKIMEEED TAEEILFNFV  60
LKILLKIFKG NIGQPEKPEA VIKNPEAVIE KPEAVIEKPE AVNEKPEAVM EKPEAVIEKV  120
RKKRKIVEED DTEETLQFLL QRLNNGESKN PPPDQIVSCI PDPNVEAQPH QFSRCIYKQL  180
TKSDINGGQS RLMLGKKEVK DKFLCLLKES EIPGVEGIDV SVYGPDGKPH EMKFKMWNKD  240
TPVLANGWSK FVKAYGLERY SYVLKIWMFR ASEDHKICFV IDSIRFDDIK KQLSKRILKN  300
VFLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635666.12e-42PREDICTED: putative B3 domain-containing protein At4g03160
TrEMBLA0A078DWB22e-43A0A078DWB2_BRANA; BnaC04g46790D protein
STRINGBra017028.1-P2e-41(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-36B3 family protein